AGATA CHARZYŃSKA PHD

AFFILIATED POSTDOC

a.charzynska@nencki.edu.pl

ABOUT ME:

Education:

•  PhD in mathematical sciences in the field of computer science, Institute of Computer Science PAS (2018)
•  MSc in Mathematics, University of Warsaw (2008)

Honors & awards:

• Doctoral scholarship for outstanding young scientists by Regional Authorities of Mazovia co-financed by the European Union (2014)
• Honorable mention for a master's degree, Faculty of Mathematics Informatics and Mechanics, University of Warsaw (2008)
• Annual scholarship for the outstanding students, Faculty of Mathematics Informatics and Mechanics, University of Warsaw (2003)

Scientific collaborations:

• 2015-2023: dr hab. Michał Dąbrowski, Associate Professor of Nencki Institute of Experimental Biology PAS

• 2012-2018: prof. dr hab. Anna Gambin, Institute of Informatics, University of Warsaw

RESEARCH INTERESTS:

SELECTED PUBLICATIONS:

• Wołczyk M., Serwa R., Kominek A., Klejman A., Miłek J., Chwałek M., Turos-Korgul L., Charzyńska A., Dąbrowski M.,  Dziembowska M., Skorski T., Piwocka K., Podszywałow-Bartnicka P. (2023). TIAR and FMRP shape pro-survival nascent proteome of leukemia cells in the bone marrow microenvironment. iScience, 26(4):106543.
• Cabaj A., Moszyńska A., Charzyńska A., Bartoszewski R., Dąbrowski M. (2022). Functional and HRE motifs count analysis of induction of selected hypoxia-responsive genes by HIF-1 and HIF-2 in human umbilical endothelial cells. Cellular Signalling, 90:110209.
• Bojko-Matuszek A., Czarnecka-Herok J., Charzyńska A., Dąbrowski M., Sikora E., (2019). Diversity of the Senescence Phenotype of Cancer Cells Treated with Chemotherapeutic Agents. Cells, 8(12):1501.
• Rozycka A., Charzyńska A., Misiewicz Z., Stępniewski T., Sobolewska A., Kossut M., Liguz-Lecznar M. (2019). Glutamate, GABA, and Presynaptic Markers Involved in Neurotransmission Are Differently Affected by Age in Distinct Mouse Brain Regions. ACS Chem. Neurosci. 10(11):4449-4461.
• Charzyńska A., Gambin,A. (2016). Improvement of the k-nn Entropy Estimator with Applications in Systems Biology.  Entropy 18(1)
• Wronowska W., Charzyńska A., Nienałtowski K., Gambin,A. (2015). Computational modeling of sphingolipid metabolism.  BMC Systems Biology 9(47)

FUNDING:

• (2016) National Science Centre (Principal Investigator dr hab. Michał Dąbrowski , OPUS: Application of DNase I-seq to identify transcription factors participating in alternative microglia activation in response to factors secreted by glioma, 2013/09/B/NZ2/03170, Nencki Institute)
• (2012-2015)  National Science Centre (Principal Investigator dr hab. Anna Gambin , OPUS: Integrative systems biology: inferring from massive heterogeneous data, 2011/01/B/NZ2/00864,  Faculty of Mathematics Informatics and Mechanics, University of Warsaw)